PAPERS in REFEREED JOURNALS/BOOK CHAPTERS
[1] Wenkai Wang, Zhenling Peng, Jianyi Yang. Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention. Nature Machine Intelligence, in press, (2026).
[2] Wenkai Wang, Xiaocheng Liu, Zhenling Peng, Jianyi Yang. The trRosettaRNA server for RNA structure prediction. Nature Protocols, (2026).
[3] Wenkai Wang, Baoquan Su, Zhenling Peng, Jianyi Yang. Integrated experimental and AI innovations for RNA structure determination. Nature Biotechnology, 44: 205-214 (2026).
[4] Wenkai Wang, Chenjie Feng, Renmin Han, Ziyi Wang, Lisha Ye, Zongyang Du, Hong Wei, Fa Zhang, Zhenling Peng, Jianyi Yang. trRosettaRNA: automated prediction of RNA 3D structure with transformer network. Nature Communications, 14: 7266 (2023).
[5] Wenkai Wang, Zhenling Peng, Jianyi Yang. Single-sequence protein structure prediction using supervised transformer protein language models. Nature Computational Science, 2: 804-814 (2022).