PAPERS in REFEREED JOURNALS/BOOK CHAPTERS

Renmin Han#, Lun Li#, Peng Yang, Fa Zhang, Xin Gao. (2019) A novel constrained reconstruction model towards high-resolution subtomogram averaging. Bioinformatics, in press.

Renmin Han#, Sheng Wang#, Xin Gao. (2019) Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing. Bioinformatics, in press.

Renmin Han, Zhipeng Bao, Xiangrui Zeng, Tongxin Niu, Fa Zhang, Min Xu, Xin Gao. (2019) A joint method for marker-free alignment of tilt series in electron tomography. Bioinformatics, 35(14), i249–i259.

Renmin Han, Xiaohua Wan, Lun Li, Albert Lawrence, Peng Yang, Yu Li, Sheng Wang, Fei Sun, Zhiyong Liu, Xin Gao, Fa Zhang. (2019) AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction. Bioinformatics, 35(2), 319-328.

Renmin Han, Yu Li, Xin Gao, Sheng Wang. (2018) An accurate and rapid continuous wavelet dynamic time warping algorithm for end-to-end mapping in ultra-long nanopore sequencing. Bioinformatics, 34(17), i722-i731.

Yu Li, Fan Xu, Fa Zhang, Pingyong Xu, Minshu Zhang, Ming Fan, Lihua Li, Xin Gao*, Renmin Han*. (2018) DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy. Bioinformatics, 34(13), i284-i294.

Renmin Han, Fa Zhang, Xin Gao. (2018) A fast fiducial marker tracking model for fully automatic alignment in electron tomography. Bioinformatics, 34(5), 853-863.

Renmin Han#, Xiaohua Wan#, Zihao Wang, Yu Hao, Jingrong Zhang, Yu Chen, Xin Gao, Zhiyong Liu, Fei Ren, Fei Sun, Fa Zhang. (2017) AuTom: A novel automatic platform for electron tomography reconstruction. Journal of Structural Biology, 199(3), 196-208.

Renmin Han, Liansan Wang, Fei Sun, Zhiyong Liu, Fa Zhang. (2015) A novel fully automatic scheme for fiducial marker-based alignment in electron tomography. Journal of Structural Biology, 192 (3), 403-417.

Renmin Han, Liansan Wang, Fan Xu, Yongdeng Zhang, Mingshu Zhang, Zhiyong Liu, Fei Ren, Fa Zhang. (2015) Drift correction for single-molecule imaging by molecular constraint field, a distance minimum metric. BMC Biophysics, 8(1): 1.

Renmin Han, Fa Zhang, Xiaohua Wan, Jose-Jesus Fernández, Fei Sun, Zhiyong Liu. (2014) A marker-free automatic alignment method based on scale-invariant features. Journal of Structural Biology, 186 (1), 167-180.

SELECTED CONFERENCE PRESENTATIONS

Renmin Han, Zhipeng Bao, Xiangrui Zeng, Tongxin Niu, Fa Zhang, Min Xu, Xin Gao. A joint method for marker-free alignment of tilt series in electron tomography. The 27th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2019, acceptance rate 18.9%), Basel, Switzerland, July 2019.

Yu Li, Fan Xu, Fa Zhang, Pingyong Xu, Minshu Zhang, Ming Fan, Lihua Li, Xin Gao*, Renmin Han*. DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy. The 26th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2018, acceptance rate 19.6%), Chicago, U.S., July 2018.

Renmin Han, Yu Li, Xin Gao, Sheng Wang. An accurate and rapid continuous wavelet dynamic time warping algorithm for end-to-end mapping in ultra-long nanopore sequencing. The 17th European Conference on Computational Biology (ECCB 2018, acceptance rate 17%), Athens, Greece, September 2018.